An extra flight will arrive in Griffith from Sydney, while Melbourne flights will return this week.
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Emergency federal funding has been granted to Regional Express and Sharp Airlines.
It means Rex will add an extra return flight to Griffith and Narrandera.
The previous schedule had been reduced in line with COVID-19 restrictions and the airline was only flying into the MIA on Tuesdays and Thursdays.
The federal government's regional airline support program provides funding to maintain a minimum weekly flying schedule to regional airports.
Funding will be provided for six months, with initial approval of six weeks.
"Regional Australia owes the Deputy Prime Minister Michael McCormack and the Morrison Government a great debt of gratitude for providing funding to ensure that it continues to receive minimal essential air links to the capital cities for medical, professional and other essential travel needs," Rex's deputy chairman John Sharp said.
"Without this intervention, many smaller regional communities would risk not having any air services at all for at least six months," Mr Sharp said.
"With the Commonwealth assistance packages for regional carriers in place, we are confident that we will be able to help all regional communities who are willing to work in partnership with us to rebuild their regional air services to their full potential over the next two years.
"Rex will stand by all regional communities that have stood by Rex during this global and national crisis."
Rex will operate 88 weekly return flights to all the destinations it serves.
Rex's services weren't the only ones to be changed, the Griffith to Melbourne route operated by Sharp Airlines in conjunction with EastWest Airlines was stopped in March.
From May 1, flights from Griffith to Essendon Fields in Melbourne will restart.
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EastWest Airlines marketing specialist Vianney Rouille said the airlines were working to deploy measures to help protect passengers.
"We will be leaving space between people as best we can," Mr Rouille said.
Essendon Fields is also working on measures to protect passengers and airline staff using the terminal.
It's been around a month since Sharp and EastWest flew to Griffith.
"We finished flying on March 22, we were proactive so that we could come back stronger," Mr Rouille said.
"I'm confident things will get better and we'll be able to increase flights."